| Round |
DraftPick |
Team |
Pick/Player |
| 1 | 1 | Kansas City Royals | PRIOR, MARK (SP) [Protected] |
| 1 | 2 | Oakland Athletics | HINSKE, ERIC (OF) [Protected] |
| 1 | 3 | St. Louis Cardinals | KEARNS, AUSTIN (OF) [Unprotected] |
| 1 | 4 | Minnesota Twins | MARTINEZ, VICTOR (C) [Protected] |
| 1 | 5 | Arizona Diamondbacks | BLALOCK, HANK (1B) [Protected] |
| 1 | 6 | Atlanta Braves | PHILLIPS, BRANDON (2B) [Protected] |
| 1 | 7 | Seattle Mariners | LOPEZ, RODRIGO (SP) [Protected] |
| 1 | 8 | | 2004 ROUND 3-26, DRAFTED (3B) [Unprotected] |
| 1 | 9 | | BURROUGHS, SEAN (3B) [Unprotected] |
| 1 | 10 | Atlanta Braves | PEAVY, JAKE (SP) [Protected] |
| 1 | 11 | | CHOI, HEE SEOP (1B) [Unprotected] |
| 1 | 12 | San Diego Padres | PEREZ, OLIVER (SP) [Protected] |
| 1 | 13 | Milwaukee Brewers | MYERS, BRETT (SP) [Protected] |
| 1 | 14 | Cleveland Indians | CRAWFORD, CARL (OF) [Protected] |
| 1 | 15 | St. Louis Cardinals | FOGG, JOSH (SP) [Protected] |
| 1 | 16 | Chicago Cubs | LEE, CLIFTON (SP) [Protected] |
| 1 | 17 | St. Louis Cardinals | BYRD, MARLON (OF) [Protected] |
| 1 | 18 | New York Mets | LACKEY, JOHN (SP) [Protected] |
| 1 | 19 | | BORCHARD, JOE (OF) [Unprotected] |